J6_4V53_003

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V53|1|DB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V53|1|DB|G|45
4V53|1|DB|G|46
*
4V53|1|DB|C|179
4V53|1|DB|G|180
4V53|1|DB|A|181
4V53|1|DB|A|182
4V53|1|DB|C|183
*
4V53|1|DB|G|214
4V53|1|DB|G|215
4V53|1|DB|A|216
4V53|1|DB|A|217
4V53|1|DB|A|218
4V53|1|DB|A|219
4V53|1|DB|G|220
4V53|1|DB|A|221
4V53|1|DB|A|222
4V53|1|DB|A|223
4V53|1|DB|U|224
*
4V53|1|DB|A|231
4V53|1|DB|G|232
4V53|1|DB|A|233
4V53|1|DB|U|234
4V53|1|DB|U|235
*
4V53|1|DB|A|262
4V53|1|DB|G|263
4V53|1|DB|C|264
4V53|1|DB|A|265
4V53|1|DB|G|266
*
4V53|1|DB|C|426
4V53|1|DB|U|427
4V53|1|DB|A|428
4V53|1|DB|A|429
4V53|1|DB|A|430
4V53|1|DB|U|431
4V53|1|DB|A|432
4V53|1|DB|C|433

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34