J6_4V54_001

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V54|1|BB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V54|1|BB|G|45
4V54|1|BB|G|46
*
4V54|1|BB|C|179
4V54|1|BB|G|180
4V54|1|BB|A|181
4V54|1|BB|A|182
4V54|1|BB|C|183
*
4V54|1|BB|G|214
4V54|1|BB|G|215
4V54|1|BB|A|216
4V54|1|BB|A|217
4V54|1|BB|A|218
4V54|1|BB|A|219
4V54|1|BB|G|220
4V54|1|BB|A|221
4V54|1|BB|A|222
4V54|1|BB|A|223
4V54|1|BB|U|224
*
4V54|1|BB|A|231
4V54|1|BB|G|232
4V54|1|BB|A|233
4V54|1|BB|U|234
4V54|1|BB|U|235
*
4V54|1|BB|A|262
4V54|1|BB|G|263
4V54|1|BB|C|264
4V54|1|BB|A|265
4V54|1|BB|G|266
*
4V54|1|BB|C|426
4V54|1|BB|U|427
4V54|1|BB|A|428
4V54|1|BB|A|429
4V54|1|BB|A|430
4V54|1|BB|U|431
4V54|1|BB|A|432
4V54|1|BB|C|433

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34