J6_4V55_001

3D structure

PDB id

4V55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V55|1|BB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V55|1|BB|G|45
4V55|1|BB|G|46
*
4V55|1|BB|C|179
4V55|1|BB|G|180
4V55|1|BB|A|181
4V55|1|BB|A|182
4V55|1|BB|C|183
*
4V55|1|BB|G|214
4V55|1|BB|G|215
4V55|1|BB|A|216
4V55|1|BB|A|217
4V55|1|BB|A|218
4V55|1|BB|A|219
4V55|1|BB|G|220
4V55|1|BB|A|221
4V55|1|BB|A|222
4V55|1|BB|A|223
4V55|1|BB|U|224
*
4V55|1|BB|A|231
4V55|1|BB|G|232
4V55|1|BB|A|233
4V55|1|BB|U|234
4V55|1|BB|U|235
*
4V55|1|BB|A|262
4V55|1|BB|G|263
4V55|1|BB|C|264
4V55|1|BB|A|265
4V55|1|BB|G|266
*
4V55|1|BB|C|426
4V55|1|BB|U|427
4V55|1|BB|A|428
4V55|1|BB|A|429
4V55|1|BB|A|430
4V55|1|BB|U|431
4V55|1|BB|A|432
4V55|1|BB|C|433

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34