J6_4V56_002

3D structure

PDB id

4V56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.93 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V56|1|DB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V56|1|DB|G|45
4V56|1|DB|G|46
*
4V56|1|DB|C|179
4V56|1|DB|G|180
4V56|1|DB|A|181
4V56|1|DB|A|182
4V56|1|DB|C|183
*
4V56|1|DB|G|214
4V56|1|DB|G|215
4V56|1|DB|A|216
4V56|1|DB|A|217
4V56|1|DB|A|218
4V56|1|DB|A|219
4V56|1|DB|G|220
4V56|1|DB|A|221
4V56|1|DB|A|222
4V56|1|DB|A|223
4V56|1|DB|U|224
*
4V56|1|DB|A|231
4V56|1|DB|G|232
4V56|1|DB|A|233
4V56|1|DB|U|234
4V56|1|DB|U|235
*
4V56|1|DB|A|262
4V56|1|DB|G|263
4V56|1|DB|C|264
4V56|1|DB|A|265
4V56|1|DB|G|266
*
4V56|1|DB|C|426
4V56|1|DB|U|427
4V56|1|DB|A|428
4V56|1|DB|A|429
4V56|1|DB|A|430
4V56|1|DB|U|431
4V56|1|DB|A|432
4V56|1|DB|C|433

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34