J6_4V57_003

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V57|1|DB|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V57|1|DB|G|45
4V57|1|DB|G|46
*
4V57|1|DB|C|179
4V57|1|DB|G|180
4V57|1|DB|A|181
4V57|1|DB|A|182
4V57|1|DB|C|183
*
4V57|1|DB|G|214
4V57|1|DB|G|215
4V57|1|DB|A|216
4V57|1|DB|A|217
4V57|1|DB|A|218
4V57|1|DB|A|219
4V57|1|DB|G|220
4V57|1|DB|A|221
4V57|1|DB|A|222
4V57|1|DB|A|223
4V57|1|DB|U|224
*
4V57|1|DB|A|231
4V57|1|DB|G|232
4V57|1|DB|A|233
4V57|1|DB|U|234
4V57|1|DB|U|235
*
4V57|1|DB|A|262
4V57|1|DB|G|263
4V57|1|DB|C|264
4V57|1|DB|A|265
4V57|1|DB|G|266
*
4V57|1|DB|C|426
4V57|1|DB|U|427
4V57|1|DB|A|428
4V57|1|DB|A|429
4V57|1|DB|A|430
4V57|1|DB|U|431
4V57|1|DB|A|432
4V57|1|DB|C|433

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34