J6_4V5C_003

3D structure

PDB id

4V5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V5C|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5C|1|DA|G|44
4V5C|1|DA|C|45
*
4V5C|1|DA|G|179
4V5C|1|DA|G|180
4V5C|1|DA|A|181
4V5C|1|DA|A|182
4V5C|1|DA|C|183
*
4V5C|1|DA|G|214
4V5C|1|DA|G|215
4V5C|1|DA|A|216
4V5C|1|DA|G|217
4V5C|1|DA|A|218
4V5C|1|DA|G|219
4V5C|1|DA|G|220
4V5C|1|DA|A|221
4V5C|1|DA|A|222
4V5C|1|DA|A|223
4V5C|1|DA|G|224
*
4V5C|1|DA|C|231
4V5C|1|DA|G|232
4V5C|1|DA|A|233
4V5C|1|DA|C|234
4V5C|1|DA|U|235
*
4V5C|1|DA|A|262
4V5C|1|DA|C|263
4V5C|1|DA|C|264
4V5C|1|DA|A|265
4V5C|1|DA|G|266
*
4V5C|1|DA|C|426
4V5C|1|DA|U|427
4V5C|1|DA|A|428
4V5C|1|DA|A|429
4V5C|1|DA|G|430
4V5C|1|DA|U|431
4V5C|1|DA|A|432
4V5C|1|DA|C|433

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34