J6_4V5D_001

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V5D|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|BA|G|44
4V5D|1|BA|C|45
*
4V5D|1|BA|G|179
4V5D|1|BA|G|180
4V5D|1|BA|A|181
4V5D|1|BA|A|182
4V5D|1|BA|C|183
*
4V5D|1|BA|G|214
4V5D|1|BA|G|215
4V5D|1|BA|A|216
4V5D|1|BA|G|217
4V5D|1|BA|A|218
4V5D|1|BA|G|219
4V5D|1|BA|G|220
4V5D|1|BA|A|221
4V5D|1|BA|A|222
4V5D|1|BA|A|223
4V5D|1|BA|G|224
*
4V5D|1|BA|C|231
4V5D|1|BA|G|232
4V5D|1|BA|A|233
4V5D|1|BA|C|234
4V5D|1|BA|U|235
*
4V5D|1|BA|A|262
4V5D|1|BA|C|263
4V5D|1|BA|C|264
4V5D|1|BA|A|265
4V5D|1|BA|G|266
*
4V5D|1|BA|C|426
4V5D|1|BA|U|427
4V5D|1|BA|A|428
4V5D|1|BA|A|429
4V5D|1|BA|G|430
4V5D|1|BA|U|431
4V5D|1|BA|A|432
4V5D|1|BA|C|433

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34