Loop J6_4V5D

3D structure

PDB id: 4V5D (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.5 Å

Loop

Sequence: UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 4V5D|1|BA|U|2076, 4V5D|1|BA|G|2428, 4V5D|1|BA|A|2430, 4V5D|1|BA|U|2431
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V5D|1|BA|U|2074
4V5D|1|BA|U|2075
4V5D|1|BA|U|2076
4V5D|1|BA|A|2077
*
4V5D|1|BA|U|2243
4V5D|1|BA|U|2244
4V5D|1|BA|U|2245
4V5D|1|BA|G|2246
*
4V5D|1|BA|C|2258
4V5D|1|BA|G|2259
*
4V5D|1|BA|C|2281
4V5D|1|BA|G|2282
4V5D|1|BA|C|2283
4V5D|1|BA|C|2284
*
4V5D|1|BA|G|2384
4V5D|1|BA|C|2385
4V5D|1|BA|C|2386
4V5D|1|BA|U|2387
4V5D|1|BA|A|2388
4V5D|1|BA|G|2389
4V5D|1|BA|U|2390
4V5D|1|BA|G|2391
4V5D|1|BA|A|2392
4V5D|1|BA|A|2393
4V5D|1|BA|C|2394
4V5D|1|BA|C|2395
*
4V5D|1|BA|G|2421
4V5D|1|BA|A|2422
4V5D|1|BA|U|2423
4V5D|1|BA|C|2424
4V5D|1|BA|A|2425
4V5D|1|BA|A|2426
4V5D|1|BA|C|2427
4V5D|1|BA|G|2428
4V5D|1|BA|G|2429
4V5D|1|BA|A|2430
4V5D|1|BA|U|2431
4V5D|1|BA|A|2432
4V5D|1|BA|A|2433
4V5D|1|BA|A|2434
4V5D|1|BA|A|2435

Current chains

Chain BA: 23S RIBOSOMAL RNA

Nearby chains

Chain AW: Transfer RNA; tRNA
Chain B0: 50S RIBOSOMAL PROTEIN L27
Chain B1: 50S RIBOSOMAL PROTEIN L28
Chain B6: 50S RIBOSOMAL PROTEIN L33
Chain B8: 50S RIBOSOMAL PROTEIN L35
Chain BD: 50S RIBOSOMAL PROTEIN L2
Chain BP: 50S RIBOSOMAL PROTEIN L15

J6_4V5D_002