J6_4V5E_003

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V5E|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5E|1|DA|G|44
4V5E|1|DA|C|45
*
4V5E|1|DA|G|179
4V5E|1|DA|G|180
4V5E|1|DA|A|181
4V5E|1|DA|A|182
4V5E|1|DA|C|183
*
4V5E|1|DA|G|214
4V5E|1|DA|G|215
4V5E|1|DA|A|216
4V5E|1|DA|G|217
4V5E|1|DA|A|218
4V5E|1|DA|G|219
4V5E|1|DA|G|220
4V5E|1|DA|A|221
4V5E|1|DA|A|222
4V5E|1|DA|A|223
4V5E|1|DA|G|224
*
4V5E|1|DA|C|231
4V5E|1|DA|G|232
4V5E|1|DA|A|233
4V5E|1|DA|C|234
4V5E|1|DA|U|235
*
4V5E|1|DA|A|262
4V5E|1|DA|C|263
4V5E|1|DA|C|264
4V5E|1|DA|A|265
4V5E|1|DA|G|266
*
4V5E|1|DA|C|426
4V5E|1|DA|U|427
4V5E|1|DA|A|428
4V5E|1|DA|A|429
4V5E|1|DA|G|430
4V5E|1|DA|U|431
4V5E|1|DA|A|432
4V5E|1|DA|C|433

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34