J6_4V5K_003

3D structure

PDB id

4V5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V5K|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5K|1|DA|G|44
4V5K|1|DA|C|45
*
4V5K|1|DA|G|179
4V5K|1|DA|G|180
4V5K|1|DA|A|181
4V5K|1|DA|A|182
4V5K|1|DA|C|183
*
4V5K|1|DA|G|214
4V5K|1|DA|G|215
4V5K|1|DA|A|216
4V5K|1|DA|G|217
4V5K|1|DA|A|218
4V5K|1|DA|G|219
4V5K|1|DA|G|220
4V5K|1|DA|A|221
4V5K|1|DA|A|222
4V5K|1|DA|A|223
4V5K|1|DA|G|224
*
4V5K|1|DA|C|231
4V5K|1|DA|G|232
4V5K|1|DA|A|233
4V5K|1|DA|C|234
4V5K|1|DA|U|235
*
4V5K|1|DA|A|262
4V5K|1|DA|C|263
4V5K|1|DA|C|264
4V5K|1|DA|A|265
4V5K|1|DA|G|266
*
4V5K|1|DA|C|426
4V5K|1|DA|U|427
4V5K|1|DA|A|428
4V5K|1|DA|A|429
4V5K|1|DA|G|430
4V5K|1|DA|U|431
4V5K|1|DA|A|432
4V5K|1|DA|C|433

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34