J6_4V5Q_003

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V5Q|1|DA|A|223, 4V5Q|1|DA|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5Q|1|DA|G|44
4V5Q|1|DA|C|45
*
4V5Q|1|DA|G|179
4V5Q|1|DA|G|180
4V5Q|1|DA|A|181
4V5Q|1|DA|A|182
4V5Q|1|DA|C|183
*
4V5Q|1|DA|G|214
4V5Q|1|DA|G|215
4V5Q|1|DA|A|216
4V5Q|1|DA|G|217
4V5Q|1|DA|A|218
4V5Q|1|DA|G|219
4V5Q|1|DA|G|220
4V5Q|1|DA|A|221
4V5Q|1|DA|A|222
4V5Q|1|DA|A|223
4V5Q|1|DA|G|224
*
4V5Q|1|DA|C|231
4V5Q|1|DA|G|232
4V5Q|1|DA|A|233
4V5Q|1|DA|C|234
4V5Q|1|DA|U|235
*
4V5Q|1|DA|A|262
4V5Q|1|DA|C|263
4V5Q|1|DA|C|264
4V5Q|1|DA|A|265
4V5Q|1|DA|G|266
*
4V5Q|1|DA|C|426
4V5Q|1|DA|U|427
4V5Q|1|DA|A|428
4V5Q|1|DA|A|429
4V5Q|1|DA|G|430
4V5Q|1|DA|U|431
4V5Q|1|DA|A|432
4V5Q|1|DA|C|433

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34