J6_4V6D_002

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V6D|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6D|1|DA|G|45
4V6D|1|DA|G|46
*
4V6D|1|DA|C|179
4V6D|1|DA|G|180
4V6D|1|DA|A|181
4V6D|1|DA|A|182
4V6D|1|DA|C|183
*
4V6D|1|DA|G|214
4V6D|1|DA|G|215
4V6D|1|DA|A|216
4V6D|1|DA|A|217
4V6D|1|DA|A|218
4V6D|1|DA|A|219
4V6D|1|DA|G|220
4V6D|1|DA|A|221
4V6D|1|DA|A|222
4V6D|1|DA|A|223
4V6D|1|DA|U|224
*
4V6D|1|DA|A|231
4V6D|1|DA|G|232
4V6D|1|DA|A|233
4V6D|1|DA|U|234
4V6D|1|DA|U|235
*
4V6D|1|DA|A|262
4V6D|1|DA|G|263
4V6D|1|DA|C|264
4V6D|1|DA|A|265
4V6D|1|DA|G|266
*
4V6D|1|DA|C|426
4V6D|1|DA|U|427
4V6D|1|DA|A|428
4V6D|1|DA|A|429
4V6D|1|DA|A|430
4V6D|1|DA|U|431
4V6D|1|DA|A|432
4V6D|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34