J6_4V6E_003

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V6E|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6E|1|DA|G|45
4V6E|1|DA|G|46
*
4V6E|1|DA|C|179
4V6E|1|DA|G|180
4V6E|1|DA|A|181
4V6E|1|DA|A|182
4V6E|1|DA|C|183
*
4V6E|1|DA|G|214
4V6E|1|DA|G|215
4V6E|1|DA|A|216
4V6E|1|DA|A|217
4V6E|1|DA|A|218
4V6E|1|DA|A|219
4V6E|1|DA|G|220
4V6E|1|DA|A|221
4V6E|1|DA|A|222
4V6E|1|DA|A|223
4V6E|1|DA|U|224
*
4V6E|1|DA|A|231
4V6E|1|DA|G|232
4V6E|1|DA|A|233
4V6E|1|DA|U|234
4V6E|1|DA|U|235
*
4V6E|1|DA|A|262
4V6E|1|DA|G|263
4V6E|1|DA|C|264
4V6E|1|DA|A|265
4V6E|1|DA|G|266
*
4V6E|1|DA|C|426
4V6E|1|DA|U|427
4V6E|1|DA|A|428
4V6E|1|DA|A|429
4V6E|1|DA|A|430
4V6E|1|DA|U|431
4V6E|1|DA|A|432
4V6E|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34