J6_4V7P_003

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V7P|1|CA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|CA|G|45
4V7P|1|CA|C|46
*
4V7P|1|CA|G|179
4V7P|1|CA|G|180
4V7P|1|CA|A|181
4V7P|1|CA|A|182
4V7P|1|CA|C|183
*
4V7P|1|CA|G|214
4V7P|1|CA|G|215
4V7P|1|CA|A|216
4V7P|1|CA|G|217
4V7P|1|CA|A|218
4V7P|1|CA|G|219
4V7P|1|CA|G|220
4V7P|1|CA|A|221
4V7P|1|CA|A|222
4V7P|1|CA|A|223
4V7P|1|CA|G|224
*
4V7P|1|CA|C|231
4V7P|1|CA|G|232
4V7P|1|CA|A|233
4V7P|1|CA|C|234
4V7P|1|CA|U|235
*
4V7P|1|CA|A|262
4V7P|1|CA|C|263
4V7P|1|CA|C|264
4V7P|1|CA|A|265
4V7P|1|CA|G|266
*
4V7P|1|CA|C|426
4V7P|1|CA|U|427
4V7P|1|CA|A|428
4V7P|1|CA|A|429
4V7P|1|CA|G|430
4V7P|1|CA|U|431
4V7P|1|CA|A|432
4V7P|1|CA|C|433

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34