J6_4V7V_003

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4V7V|1|DA|A|223, 4V7V|1|DA|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7V|1|DA|G|45
4V7V|1|DA|G|46
*
4V7V|1|DA|C|179
4V7V|1|DA|G|180
4V7V|1|DA|A|181
4V7V|1|DA|A|182
4V7V|1|DA|C|183
*
4V7V|1|DA|G|214
4V7V|1|DA|G|215
4V7V|1|DA|A|216
4V7V|1|DA|A|217
4V7V|1|DA|A|218
4V7V|1|DA|A|219
4V7V|1|DA|G|220
4V7V|1|DA|A|221
4V7V|1|DA|A|222
4V7V|1|DA|A|223
4V7V|1|DA|U|224
*
4V7V|1|DA|A|231
4V7V|1|DA|G|232
4V7V|1|DA|A|233
4V7V|1|DA|U|234
4V7V|1|DA|U|235
*
4V7V|1|DA|A|262
4V7V|1|DA|G|263
4V7V|1|DA|C|264
4V7V|1|DA|A|265
4V7V|1|DA|G|266
*
4V7V|1|DA|C|426
4V7V|1|DA|U|427
4V7V|1|DA|A|428
4V7V|1|DA|A|429
4V7V|1|DA|A|430
4V7V|1|DA|U|431
4V7V|1|DA|A|432
4V7V|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34