J6_4V83_001

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V83|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V83|1|BA|G|45
4V83|1|BA|C|46
*
4V83|1|BA|G|179
4V83|1|BA|G|180
4V83|1|BA|A|181
4V83|1|BA|A|182
4V83|1|BA|C|183
*
4V83|1|BA|G|214
4V83|1|BA|G|215
4V83|1|BA|A|216
4V83|1|BA|G|217
4V83|1|BA|A|218
4V83|1|BA|G|219
4V83|1|BA|G|220
4V83|1|BA|A|221
4V83|1|BA|A|222
4V83|1|BA|A|223
4V83|1|BA|G|224
*
4V83|1|BA|C|231
4V83|1|BA|G|232
4V83|1|BA|A|233
4V83|1|BA|C|234
4V83|1|BA|U|235
*
4V83|1|BA|A|262
4V83|1|BA|C|263
4V83|1|BA|C|264
4V83|1|BA|A|265
4V83|1|BA|G|266
*
4V83|1|BA|C|426
4V83|1|BA|U|427
4V83|1|BA|A|428
4V83|1|BA|A|429
4V83|1|BA|G|430
4V83|1|BA|U|431
4V83|1|BA|A|432
4V83|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34