J6_4V84_001

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V84|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|BA|G|45
4V84|1|BA|C|46
*
4V84|1|BA|G|179
4V84|1|BA|G|180
4V84|1|BA|A|181
4V84|1|BA|A|182
4V84|1|BA|C|183
*
4V84|1|BA|G|214
4V84|1|BA|G|215
4V84|1|BA|A|216
4V84|1|BA|G|217
4V84|1|BA|A|218
4V84|1|BA|G|219
4V84|1|BA|G|220
4V84|1|BA|A|221
4V84|1|BA|A|222
4V84|1|BA|A|223
4V84|1|BA|G|224
*
4V84|1|BA|C|231
4V84|1|BA|G|232
4V84|1|BA|A|233
4V84|1|BA|C|234
4V84|1|BA|U|235
*
4V84|1|BA|A|262
4V84|1|BA|C|263
4V84|1|BA|C|264
4V84|1|BA|A|265
4V84|1|BA|G|266
*
4V84|1|BA|C|426
4V84|1|BA|U|427
4V84|1|BA|A|428
4V84|1|BA|A|429
4V84|1|BA|G|430
4V84|1|BA|U|431
4V84|1|BA|A|432
4V84|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34