J6_4V87_003

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V87|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V87|1|DA|G|45
4V87|1|DA|C|46
*
4V87|1|DA|G|179
4V87|1|DA|G|180
4V87|1|DA|A|181
4V87|1|DA|A|182
4V87|1|DA|C|183
*
4V87|1|DA|G|214
4V87|1|DA|G|215
4V87|1|DA|A|216
4V87|1|DA|G|217
4V87|1|DA|A|218
4V87|1|DA|G|219
4V87|1|DA|G|220
4V87|1|DA|A|221
4V87|1|DA|A|222
4V87|1|DA|A|223
4V87|1|DA|G|224
*
4V87|1|DA|C|231
4V87|1|DA|G|232
4V87|1|DA|A|233
4V87|1|DA|C|234
4V87|1|DA|U|235
*
4V87|1|DA|A|262
4V87|1|DA|C|263
4V87|1|DA|C|264
4V87|1|DA|A|265
4V87|1|DA|G|266
*
4V87|1|DA|C|426
4V87|1|DA|U|427
4V87|1|DA|A|428
4V87|1|DA|A|429
4V87|1|DA|G|430
4V87|1|DA|U|431
4V87|1|DA|A|432
4V87|1|DA|C|433

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain D7

50S ribosomal protein L34