J6_4V88_002
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 4V88|1|A1|G|2418, 4V88|1|A1|C|2760, 4V88|1|A1|A|2799, 4V88|1|A1|A|2801, 4V88|1|A1|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V88|1|A1|U|2416
4V88|1|A1|U|2417
4V88|1|A1|G|2418
4V88|1|A1|A|2419
*
4V88|1|A1|U|2611
4V88|1|A1|U|2612
4V88|1|A1|U|2613
4V88|1|A1|G|2614
*
4V88|1|A1|C|2627
4V88|1|A1|A|2628
*
4V88|1|A1|U|2650
4V88|1|A1|G|2651
4V88|1|A1|U|2652
4V88|1|A1|C|2653
*
4V88|1|A1|G|2754
4V88|1|A1|C|2755
4V88|1|A1|C|2756
4V88|1|A1|U|2757
4V88|1|A1|A|2758
4V88|1|A1|U|2759
4V88|1|A1|C|2760
4V88|1|A1|G|2761
4V88|1|A1|A|2762
4V88|1|A1|U|2763
4V88|1|A1|C|2764
4V88|1|A1|C|2765
*
4V88|1|A1|G|2793
4V88|1|A1|G|2794
4V88|1|A1|U|2795
4V88|1|A1|G|2796
4V88|1|A1|C|2797
4V88|1|A1|C|2798
4V88|1|A1|A|2799
4V88|1|A1|G|2800
4V88|1|A1|A|2801
4V88|1|A1|A|2802
4V88|1|A1|A|2803
4V88|1|A1|A|2804
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BA
- 60S ribosomal protein L2-A
- Chain BN
- 60S ribosomal protein L15-A
- Chain BQ
- 60S ribosomal protein L18-A
- Chain BT
- 60S ribosomal protein L21-A
- Chain Ba
- 60S ribosomal protein L28
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- 60S ribosomal protein L42-A
Coloring options: