J6_4V88_003
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 4V88|1|A5|A|67, 4V88|1|A5|U|329, 4V88|1|A8|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V88|1|A5|G|22
4V88|1|A5|A|23
4V88|1|A5|G|24
4V88|1|A5|U|25
4V88|1|A5|A|26
4V88|1|A5|C|27
*
4V88|1|A5|G|58
4V88|1|A5|G|59
4V88|1|A5|A|60
4V88|1|A5|A|61
4V88|1|A5|A|62
4V88|1|A5|A|63
4V88|1|A5|G|64
4V88|1|A5|A|65
4V88|1|A5|A|66
4V88|1|A5|A|67
4V88|1|A5|C|68
*
4V88|1|A5|G|75
4V88|1|A5|G|76
4V88|1|A5|A|77
4V88|1|A5|U|78
4V88|1|A5|U|79
*
4V88|1|A5|A|106
4V88|1|A5|A|107
4V88|1|A5|A|108
4V88|1|A5|A|109
4V88|1|A5|G|110
*
4V88|1|A5|C|321
4V88|1|A5|U|322
4V88|1|A5|A|323
4V88|1|A5|A|324
4V88|1|A5|A|325
4V88|1|A5|U|326
4V88|1|A5|A|327
4V88|1|A5|U|328
4V88|1|A5|U|329
4V88|1|A5|G|330
4V88|1|A5|G|331
*
4V88|1|A8|C|32
4V88|1|A8|A|33
4V88|1|A8|U|34
4V88|1|A8|C|35
Current chains
- Chain A5
- 25S rRNA
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain DC
- 60S ribosomal protein L4-A
- Chain DL
- 60S ribosomal protein L13-A
- Chain DN
- 60S ribosomal protein L15-A
- Chain Dh
- 60S ribosomal protein L35-A
- Chain Di
- 60S ribosomal protein L36-A
- Chain Dj
- 60S ribosomal protein L37-A
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