J6_4V8C_001

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V8C|1|AA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8C|1|AA|G|45
4V8C|1|AA|C|46
*
4V8C|1|AA|G|179
4V8C|1|AA|G|180
4V8C|1|AA|A|181
4V8C|1|AA|A|182
4V8C|1|AA|C|183
*
4V8C|1|AA|G|214
4V8C|1|AA|G|215
4V8C|1|AA|A|216
4V8C|1|AA|G|217
4V8C|1|AA|A|218
4V8C|1|AA|G|219
4V8C|1|AA|G|220
4V8C|1|AA|A|221
4V8C|1|AA|A|222
4V8C|1|AA|A|223
4V8C|1|AA|G|224
*
4V8C|1|AA|C|231
4V8C|1|AA|G|232
4V8C|1|AA|A|233
4V8C|1|AA|C|234
4V8C|1|AA|U|235
*
4V8C|1|AA|A|262
4V8C|1|AA|C|263
4V8C|1|AA|C|264
4V8C|1|AA|A|265
4V8C|1|AA|G|266
*
4V8C|1|AA|C|426
4V8C|1|AA|U|427
4V8C|1|AA|A|428
4V8C|1|AA|A|429
4V8C|1|AA|G|430
4V8C|1|AA|U|431
4V8C|1|AA|A|432
4V8C|1|AA|C|433

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A7

50S ribosomal protein L34