J6_4V8D_001

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V8D|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8D|1|BA|G|45
4V8D|1|BA|C|46
*
4V8D|1|BA|G|179
4V8D|1|BA|G|180
4V8D|1|BA|A|181
4V8D|1|BA|A|182
4V8D|1|BA|C|183
*
4V8D|1|BA|G|214
4V8D|1|BA|G|215
4V8D|1|BA|A|216
4V8D|1|BA|G|217
4V8D|1|BA|A|218
4V8D|1|BA|G|219
4V8D|1|BA|G|220
4V8D|1|BA|A|221
4V8D|1|BA|A|222
4V8D|1|BA|A|223
4V8D|1|BA|G|224
*
4V8D|1|BA|C|231
4V8D|1|BA|G|232
4V8D|1|BA|A|233
4V8D|1|BA|C|234
4V8D|1|BA|U|235
*
4V8D|1|BA|A|262
4V8D|1|BA|C|263
4V8D|1|BA|C|264
4V8D|1|BA|A|265
4V8D|1|BA|G|266
*
4V8D|1|BA|C|426
4V8D|1|BA|U|427
4V8D|1|BA|A|428
4V8D|1|BA|A|429
4V8D|1|BA|G|430
4V8D|1|BA|U|431
4V8D|1|BA|A|432
4V8D|1|BA|C|433

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B7

50S ribosomal protein L34