J6_4V8G_002

3D structure

PDB id

4V8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RMF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4V8G|1|BA|U|2076, 4V8G|1|BA|A|2388, 4V8G|1|BA|U|2390, 4V8G|1|BA|G|2428, 4V8G|1|BA|A|2430, 4V8G|1|BA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8G|1|BA|U|2074
4V8G|1|BA|U|2075
4V8G|1|BA|U|2076
4V8G|1|BA|A|2077
*
4V8G|1|BA|U|2243
4V8G|1|BA|U|2244
4V8G|1|BA|U|2245
4V8G|1|BA|G|2246
*
4V8G|1|BA|C|2258
4V8G|1|BA|G|2259
*
4V8G|1|BA|C|2281
4V8G|1|BA|G|2282
4V8G|1|BA|C|2283
4V8G|1|BA|C|2284
*
4V8G|1|BA|G|2384
4V8G|1|BA|C|2385
4V8G|1|BA|C|2386
4V8G|1|BA|U|2387
4V8G|1|BA|A|2388
4V8G|1|BA|G|2389
4V8G|1|BA|U|2390
4V8G|1|BA|G|2391
4V8G|1|BA|A|2392
4V8G|1|BA|A|2393
4V8G|1|BA|C|2394
4V8G|1|BA|C|2395
*
4V8G|1|BA|G|2421
4V8G|1|BA|A|2422
4V8G|1|BA|U|2423
4V8G|1|BA|C|2424
4V8G|1|BA|A|2425
4V8G|1|BA|A|2426
4V8G|1|BA|C|2427
4V8G|1|BA|G|2428
4V8G|1|BA|G|2429
4V8G|1|BA|A|2430
4V8G|1|BA|U|2431
4V8G|1|BA|A|2432
4V8G|1|BA|A|2433
4V8G|1|BA|A|2434
4V8G|1|BA|A|2435

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B0

50S Ribosomal Protein L27

Chain B1

50S Ribosomal Protein L28

Chain B6

50S Ribosomal Protein L33

Chain B8

50S Ribosomal Protein L35

Chain BD

50S Ribosomal Protein L2

Chain BP

50S Ribosomal Protein L15