J6_4V8I_003

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V8I|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8I|1|DA|G|44
4V8I|1|DA|C|45
*
4V8I|1|DA|G|179
4V8I|1|DA|G|180
4V8I|1|DA|A|181
4V8I|1|DA|A|182
4V8I|1|DA|C|183
*
4V8I|1|DA|G|214
4V8I|1|DA|G|215
4V8I|1|DA|A|216
4V8I|1|DA|G|217
4V8I|1|DA|A|218
4V8I|1|DA|G|219
4V8I|1|DA|G|220
4V8I|1|DA|A|221
4V8I|1|DA|A|222
4V8I|1|DA|A|223
4V8I|1|DA|G|224
*
4V8I|1|DA|C|231
4V8I|1|DA|G|232
4V8I|1|DA|A|233
4V8I|1|DA|C|234
4V8I|1|DA|U|235
*
4V8I|1|DA|A|262
4V8I|1|DA|C|263
4V8I|1|DA|C|264
4V8I|1|DA|A|265
4V8I|1|DA|G|266
*
4V8I|1|DA|C|426
4V8I|1|DA|U|427
4V8I|1|DA|A|428
4V8I|1|DA|A|429
4V8I|1|DA|G|430
4V8I|1|DA|U|431
4V8I|1|DA|A|432
4V8I|1|DA|C|433

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34