J6_4V8N_001

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V8N|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|BA|G|44
4V8N|1|BA|C|45
*
4V8N|1|BA|G|179
4V8N|1|BA|G|180
4V8N|1|BA|A|181
4V8N|1|BA|A|182
4V8N|1|BA|C|183
*
4V8N|1|BA|G|214
4V8N|1|BA|G|215
4V8N|1|BA|A|216
4V8N|1|BA|G|217
4V8N|1|BA|A|218
4V8N|1|BA|G|219
4V8N|1|BA|G|220
4V8N|1|BA|A|221
4V8N|1|BA|A|222
4V8N|1|BA|A|223
4V8N|1|BA|G|224
*
4V8N|1|BA|C|231
4V8N|1|BA|G|232
4V8N|1|BA|A|233
4V8N|1|BA|C|234
4V8N|1|BA|U|235
*
4V8N|1|BA|A|262
4V8N|1|BA|C|263
4V8N|1|BA|C|264
4V8N|1|BA|A|265
4V8N|1|BA|G|266
*
4V8N|1|BA|C|426
4V8N|1|BA|U|427
4V8N|1|BA|A|428
4V8N|1|BA|A|429
4V8N|1|BA|G|430
4V8N|1|BA|U|431
4V8N|1|BA|A|432
4V8N|1|BA|C|433

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34