J6_4V8Q_001

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V8Q|1|AA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Q|1|AA|G|44
4V8Q|1|AA|C|45
*
4V8Q|1|AA|G|179
4V8Q|1|AA|G|180
4V8Q|1|AA|A|181
4V8Q|1|AA|A|182
4V8Q|1|AA|C|183
*
4V8Q|1|AA|G|214
4V8Q|1|AA|G|215
4V8Q|1|AA|A|216
4V8Q|1|AA|G|217
4V8Q|1|AA|A|218
4V8Q|1|AA|G|219
4V8Q|1|AA|G|220
4V8Q|1|AA|A|221
4V8Q|1|AA|A|222
4V8Q|1|AA|A|223
4V8Q|1|AA|G|224
*
4V8Q|1|AA|C|231
4V8Q|1|AA|G|232
4V8Q|1|AA|A|233
4V8Q|1|AA|C|234
4V8Q|1|AA|U|235
*
4V8Q|1|AA|A|262
4V8Q|1|AA|C|263
4V8Q|1|AA|C|264
4V8Q|1|AA|A|265
4V8Q|1|AA|G|266
*
4V8Q|1|AA|C|426
4V8Q|1|AA|U|427
4V8Q|1|AA|A|428
4V8Q|1|AA|A|429
4V8Q|1|AA|G|430
4V8Q|1|AA|U|431
4V8Q|1|AA|A|432
4V8Q|1|AA|C|433

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A7

50S RIBOSOMAL PROTEIN L34