J6_4V8X_001

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V8X|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8X|1|BA|G|44
4V8X|1|BA|C|45
*
4V8X|1|BA|G|179
4V8X|1|BA|G|180
4V8X|1|BA|A|181
4V8X|1|BA|A|182
4V8X|1|BA|C|183
*
4V8X|1|BA|G|214
4V8X|1|BA|G|215
4V8X|1|BA|A|216
4V8X|1|BA|G|217
4V8X|1|BA|A|218
4V8X|1|BA|G|219
4V8X|1|BA|G|220
4V8X|1|BA|A|221
4V8X|1|BA|A|222
4V8X|1|BA|A|223
4V8X|1|BA|G|224
*
4V8X|1|BA|C|231
4V8X|1|BA|G|232
4V8X|1|BA|A|233
4V8X|1|BA|C|234
4V8X|1|BA|U|235
*
4V8X|1|BA|A|262
4V8X|1|BA|C|263
4V8X|1|BA|C|264
4V8X|1|BA|A|265
4V8X|1|BA|G|266
*
4V8X|1|BA|C|426
4V8X|1|BA|U|427
4V8X|1|BA|A|428
4V8X|1|BA|A|429
4V8X|1|BA|G|430
4V8X|1|BA|U|431
4V8X|1|BA|A|432
4V8X|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34