J6_4V8Y_001
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 4V8Y|1|B5|A|67, 4V8Y|1|B5|U|329, 4V8Y|1|B8|U|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8Y|1|B5|G|22
4V8Y|1|B5|A|23
4V8Y|1|B5|G|24
4V8Y|1|B5|U|25
4V8Y|1|B5|A|26
4V8Y|1|B5|C|27
*
4V8Y|1|B5|G|58
4V8Y|1|B5|G|59
4V8Y|1|B5|A|60
4V8Y|1|B5|A|61
4V8Y|1|B5|A|62
4V8Y|1|B5|A|63
4V8Y|1|B5|G|64
4V8Y|1|B5|A|65
4V8Y|1|B5|A|66
4V8Y|1|B5|A|67
4V8Y|1|B5|C|68
*
4V8Y|1|B5|G|75
4V8Y|1|B5|G|76
4V8Y|1|B5|A|77
4V8Y|1|B5|U|78
4V8Y|1|B5|U|79
*
4V8Y|1|B5|A|106
4V8Y|1|B5|A|107
4V8Y|1|B5|A|108
4V8Y|1|B5|A|109
4V8Y|1|B5|G|110
*
4V8Y|1|B5|C|321
4V8Y|1|B5|U|322
4V8Y|1|B5|A|323
4V8Y|1|B5|A|324
4V8Y|1|B5|A|325
4V8Y|1|B5|U|326
4V8Y|1|B5|A|327
4V8Y|1|B5|U|328
4V8Y|1|B5|U|329
4V8Y|1|B5|G|330
4V8Y|1|B5|G|331
*
4V8Y|1|B8|C|32
4V8Y|1|B8|A|33
4V8Y|1|B8|U|34
4V8Y|1|B8|C|35
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36-A
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
Coloring options: