J6_4V9B_001

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9B|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9B|1|BA|G|45
4V9B|1|BA|C|46
*
4V9B|1|BA|G|179
4V9B|1|BA|G|180
4V9B|1|BA|A|181
4V9B|1|BA|A|182
4V9B|1|BA|C|183
*
4V9B|1|BA|G|214
4V9B|1|BA|G|215
4V9B|1|BA|A|216
4V9B|1|BA|G|217
4V9B|1|BA|A|218
4V9B|1|BA|G|219
4V9B|1|BA|G|220
4V9B|1|BA|A|221
4V9B|1|BA|A|222
4V9B|1|BA|A|223
4V9B|1|BA|G|224
*
4V9B|1|BA|C|231
4V9B|1|BA|G|232
4V9B|1|BA|A|233
4V9B|1|BA|C|234
4V9B|1|BA|U|235
*
4V9B|1|BA|A|262
4V9B|1|BA|C|263
4V9B|1|BA|C|264
4V9B|1|BA|A|265
4V9B|1|BA|G|266
*
4V9B|1|BA|C|426
4V9B|1|BA|U|427
4V9B|1|BA|A|428
4V9B|1|BA|A|429
4V9B|1|BA|G|430
4V9B|1|BA|U|431
4V9B|1|BA|A|432
4V9B|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34