J6_4V9F_001
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GC*GGAAC*GGAACAGAAAA*UGAUG*UACAG*CUAAACAC
- Length
- 36 nucleotides
- Bulged bases
- 4V9F|1|0|A|193, 4V9F|1|0|C|438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J6_45299.4
- Basepair signature
- cWW-cSS-cWW-cSS-tWW-F-tWW-F-F-cWW-tSS-tHW-cWW-cWW-cSS-F-F-tHS-F-cWW-cSS-cSS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V9F|1|0|G|41
4V9F|1|0|C|42
*
4V9F|1|0|G|149
4V9F|1|0|G|150
4V9F|1|0|A|151
4V9F|1|0|A|152
4V9F|1|0|C|153
*
4V9F|1|0|G|184
4V9F|1|0|G|185
4V9F|1|0|A|186
4V9F|1|0|A|187
4V9F|1|0|C|188
4V9F|1|0|A|189
4V9F|1|0|G|190
4V9F|1|0|A|191
4V9F|1|0|A|192
4V9F|1|0|A|193
4V9F|1|0|A|194
*
4V9F|1|0|U|202
4V9F|1|0|G|203
4V9F|1|0|A|204
4V9F|1|0|U|205
4V9F|1|0|G|206
*
4V9F|1|0|U|233
4V9F|1|0|A|234
4V9F|1|0|C|235
4V9F|1|0|A|236
4V9F|1|0|G|237
*
4V9F|1|0|C|433
4V9F|1|0|U|434
4V9F|1|0|A|435
4V9F|1|0|A|436
4V9F|1|0|A|437
4V9F|1|0|C|438
4V9F|1|0|A|439
4V9F|1|0|C|440
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain C
- 50S ribosomal protein L4P
- Chain M
- 50S ribosomal protein L15e
Coloring options: