J6_4V9J_003

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9J|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9J|1|DA|G|45
4V9J|1|DA|C|46
*
4V9J|1|DA|G|179
4V9J|1|DA|G|180
4V9J|1|DA|A|181
4V9J|1|DA|A|182
4V9J|1|DA|C|183
*
4V9J|1|DA|G|214
4V9J|1|DA|G|215
4V9J|1|DA|A|216
4V9J|1|DA|G|217
4V9J|1|DA|A|218
4V9J|1|DA|G|219
4V9J|1|DA|G|220
4V9J|1|DA|A|221
4V9J|1|DA|A|222
4V9J|1|DA|A|223
4V9J|1|DA|G|224
*
4V9J|1|DA|C|231
4V9J|1|DA|G|232
4V9J|1|DA|A|233
4V9J|1|DA|C|234
4V9J|1|DA|U|235
*
4V9J|1|DA|A|262
4V9J|1|DA|C|263
4V9J|1|DA|C|264
4V9J|1|DA|A|265
4V9J|1|DA|G|266
*
4V9J|1|DA|C|426
4V9J|1|DA|U|427
4V9J|1|DA|A|428
4V9J|1|DA|A|429
4V9J|1|DA|G|430
4V9J|1|DA|U|431
4V9J|1|DA|A|432
4V9J|1|DA|C|433

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34