J6_4V9M_001

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9M|1|BA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9M|1|BA|G|45
4V9M|1|BA|C|46
*
4V9M|1|BA|G|179
4V9M|1|BA|G|180
4V9M|1|BA|A|181
4V9M|1|BA|A|182
4V9M|1|BA|C|183
*
4V9M|1|BA|G|214
4V9M|1|BA|G|215
4V9M|1|BA|A|216
4V9M|1|BA|G|217
4V9M|1|BA|A|218
4V9M|1|BA|G|219
4V9M|1|BA|G|220
4V9M|1|BA|A|221
4V9M|1|BA|A|222
4V9M|1|BA|A|223
4V9M|1|BA|G|224
*
4V9M|1|BA|C|231
4V9M|1|BA|G|232
4V9M|1|BA|A|233
4V9M|1|BA|C|234
4V9M|1|BA|U|235
*
4V9M|1|BA|A|262
4V9M|1|BA|C|263
4V9M|1|BA|C|264
4V9M|1|BA|A|265
4V9M|1|BA|G|266
*
4V9M|1|BA|C|426
4V9M|1|BA|U|427
4V9M|1|BA|A|428
4V9M|1|BA|A|429
4V9M|1|BA|G|430
4V9M|1|BA|U|431
4V9M|1|BA|A|432
4V9M|1|BA|C|433

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34