J6_4V9M_002

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4V9M|1|BA|U|2076, 4V9M|1|BA|G|2428, 4V9M|1|BA|A|2430, 4V9M|1|BA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9M|1|BA|U|2074
4V9M|1|BA|U|2075
4V9M|1|BA|U|2076
4V9M|1|BA|A|2077
*
4V9M|1|BA|U|2243
4V9M|1|BA|U|2244
4V9M|1|BA|U|2245
4V9M|1|BA|G|2246
*
4V9M|1|BA|C|2258
4V9M|1|BA|G|2259
*
4V9M|1|BA|C|2281
4V9M|1|BA|G|2282
4V9M|1|BA|C|2283
4V9M|1|BA|C|2284
*
4V9M|1|BA|G|2384
4V9M|1|BA|C|2385
4V9M|1|BA|C|2386
4V9M|1|BA|U|2387
4V9M|1|BA|A|2388
4V9M|1|BA|G|2389
4V9M|1|BA|U|2390
4V9M|1|BA|G|2391
4V9M|1|BA|A|2392
4V9M|1|BA|A|2393
4V9M|1|BA|C|2394
4V9M|1|BA|C|2395
*
4V9M|1|BA|G|2421
4V9M|1|BA|A|2422
4V9M|1|BA|U|2423
4V9M|1|BA|C|2424
4V9M|1|BA|A|2425
4V9M|1|BA|A|2426
4V9M|1|BA|C|2427
4V9M|1|BA|G|2428
4V9M|1|BA|G|2429
4V9M|1|BA|A|2430
4V9M|1|BA|U|2431
4V9M|1|BA|A|2432
4V9M|1|BA|A|2433
4V9M|1|BA|A|2434
4V9M|1|BA|A|2435

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B0

50S ribosomal protein L27

Chain B1

50S ribosomal protein L28

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BD

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15