J6_4V9Q_001

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9Q|1|AA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|AA|G|45
4V9Q|1|AA|C|46
*
4V9Q|1|AA|G|179
4V9Q|1|AA|G|180
4V9Q|1|AA|A|181
4V9Q|1|AA|A|182
4V9Q|1|AA|C|183
*
4V9Q|1|AA|G|214
4V9Q|1|AA|G|215
4V9Q|1|AA|A|216
4V9Q|1|AA|G|217
4V9Q|1|AA|A|218
4V9Q|1|AA|G|219
4V9Q|1|AA|G|220
4V9Q|1|AA|A|221
4V9Q|1|AA|A|222
4V9Q|1|AA|A|223
4V9Q|1|AA|G|224
*
4V9Q|1|AA|C|231
4V9Q|1|AA|G|232
4V9Q|1|AA|A|233
4V9Q|1|AA|C|234
4V9Q|1|AA|U|235
*
4V9Q|1|AA|A|262
4V9Q|1|AA|C|263
4V9Q|1|AA|C|264
4V9Q|1|AA|A|265
4V9Q|1|AA|G|266
*
4V9Q|1|AA|C|426
4V9Q|1|AA|U|427
4V9Q|1|AA|A|428
4V9Q|1|AA|A|429
4V9Q|1|AA|G|430
4V9Q|1|AA|U|431
4V9Q|1|AA|A|432
4V9Q|1|AA|C|433

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L34