J6_4V9R_001

3D structure

PDB id

4V9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9R|1|BA|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9R|1|BA|G|44
4V9R|1|BA|C|45
*
4V9R|1|BA|G|168
4V9R|1|BA|G|169
4V9R|1|BA|A|170
4V9R|1|BA|A|171
4V9R|1|BA|C|172
*
4V9R|1|BA|G|203
4V9R|1|BA|G|204
4V9R|1|BA|A|205
4V9R|1|BA|G|206
4V9R|1|BA|A|207
4V9R|1|BA|G|208
4V9R|1|BA|G|209
4V9R|1|BA|A|210
4V9R|1|BA|A|211
4V9R|1|BA|A|212
4V9R|1|BA|G|213
*
4V9R|1|BA|C|220
4V9R|1|BA|G|221
4V9R|1|BA|A|222
4V9R|1|BA|C|223
4V9R|1|BA|U|224
*
4V9R|1|BA|A|251
4V9R|1|BA|C|252
4V9R|1|BA|C|253
4V9R|1|BA|A|254
4V9R|1|BA|G|255
*
4V9R|1|BA|C|453
4V9R|1|BA|U|454
4V9R|1|BA|A|455
4V9R|1|BA|A|456
4V9R|1|BA|G|457
4V9R|1|BA|U|458
4V9R|1|BA|A|459
4V9R|1|BA|C|460

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34