J6_4V9S_001

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9S|1|BA|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9S|1|BA|G|44
4V9S|1|BA|C|45
*
4V9S|1|BA|G|168
4V9S|1|BA|G|169
4V9S|1|BA|A|170
4V9S|1|BA|A|171
4V9S|1|BA|C|172
*
4V9S|1|BA|G|203
4V9S|1|BA|G|204
4V9S|1|BA|A|205
4V9S|1|BA|G|206
4V9S|1|BA|A|207
4V9S|1|BA|G|208
4V9S|1|BA|G|209
4V9S|1|BA|A|210
4V9S|1|BA|A|211
4V9S|1|BA|A|212
4V9S|1|BA|G|213
*
4V9S|1|BA|C|220
4V9S|1|BA|G|221
4V9S|1|BA|A|222
4V9S|1|BA|C|223
4V9S|1|BA|U|224
*
4V9S|1|BA|A|251
4V9S|1|BA|C|252
4V9S|1|BA|C|253
4V9S|1|BA|A|254
4V9S|1|BA|G|255
*
4V9S|1|BA|C|453
4V9S|1|BA|U|454
4V9S|1|BA|A|455
4V9S|1|BA|A|456
4V9S|1|BA|G|457
4V9S|1|BA|U|458
4V9S|1|BA|A|459
4V9S|1|BA|C|460

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34