J6_4V9S_003

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4V9S|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9S|1|DA|G|44
4V9S|1|DA|C|45
*
4V9S|1|DA|G|179
4V9S|1|DA|G|180
4V9S|1|DA|A|181
4V9S|1|DA|A|182
4V9S|1|DA|C|183
*
4V9S|1|DA|G|214
4V9S|1|DA|G|215
4V9S|1|DA|A|216
4V9S|1|DA|G|217
4V9S|1|DA|A|218
4V9S|1|DA|G|219
4V9S|1|DA|G|220
4V9S|1|DA|A|221
4V9S|1|DA|A|222
4V9S|1|DA|A|223
4V9S|1|DA|G|224
*
4V9S|1|DA|C|231
4V9S|1|DA|G|232
4V9S|1|DA|A|233
4V9S|1|DA|C|234
4V9S|1|DA|U|235
*
4V9S|1|DA|A|262
4V9S|1|DA|C|263
4V9S|1|DA|C|264
4V9S|1|DA|A|265
4V9S|1|DA|G|266
*
4V9S|1|DA|C|426
4V9S|1|DA|U|427
4V9S|1|DA|A|428
4V9S|1|DA|A|429
4V9S|1|DA|G|430
4V9S|1|DA|U|431
4V9S|1|DA|A|432
4V9S|1|DA|C|433

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34