J6_4W2H_003

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4W2H|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2H|1|DA|G|44
4W2H|1|DA|C|45
*
4W2H|1|DA|G|179
4W2H|1|DA|G|180
4W2H|1|DA|A|181
4W2H|1|DA|A|182
4W2H|1|DA|C|183
*
4W2H|1|DA|G|214
4W2H|1|DA|G|215
4W2H|1|DA|A|216
4W2H|1|DA|G|217
4W2H|1|DA|A|218
4W2H|1|DA|G|219
4W2H|1|DA|G|220
4W2H|1|DA|A|221
4W2H|1|DA|A|222
4W2H|1|DA|A|223
4W2H|1|DA|G|224
*
4W2H|1|DA|C|231
4W2H|1|DA|G|232
4W2H|1|DA|A|233
4W2H|1|DA|C|234
4W2H|1|DA|U|235
*
4W2H|1|DA|A|262
4W2H|1|DA|C|263
4W2H|1|DA|C|264
4W2H|1|DA|A|265
4W2H|1|DA|G|266
*
4W2H|1|DA|C|426
4W2H|1|DA|U|427
4W2H|1|DA|A|428
4W2H|1|DA|A|429
4W2H|1|DA|G|430
4W2H|1|DA|U|431
4W2H|1|DA|A|432
4W2H|1|DA|C|433

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34