J6_4W2I_001

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4W2I|1|BA|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2I|1|BA|G|44
4W2I|1|BA|C|45
*
4W2I|1|BA|G|168
4W2I|1|BA|G|169
4W2I|1|BA|A|170
4W2I|1|BA|A|171
4W2I|1|BA|C|172
*
4W2I|1|BA|G|203
4W2I|1|BA|G|204
4W2I|1|BA|A|205
4W2I|1|BA|G|206
4W2I|1|BA|A|207
4W2I|1|BA|G|208
4W2I|1|BA|G|209
4W2I|1|BA|A|210
4W2I|1|BA|A|211
4W2I|1|BA|A|212
4W2I|1|BA|G|213
*
4W2I|1|BA|C|220
4W2I|1|BA|G|221
4W2I|1|BA|A|222
4W2I|1|BA|C|223
4W2I|1|BA|U|224
*
4W2I|1|BA|A|251
4W2I|1|BA|C|252
4W2I|1|BA|C|253
4W2I|1|BA|A|254
4W2I|1|BA|G|255
*
4W2I|1|BA|C|453
4W2I|1|BA|U|454
4W2I|1|BA|A|455
4W2I|1|BA|A|456
4W2I|1|BA|G|457
4W2I|1|BA|U|458
4W2I|1|BA|A|459
4W2I|1|BA|C|460

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34