J6_4W2I_003

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4W2I|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2I|1|DA|G|44
4W2I|1|DA|C|45
*
4W2I|1|DA|G|179
4W2I|1|DA|G|180
4W2I|1|DA|A|181
4W2I|1|DA|A|182
4W2I|1|DA|C|183
*
4W2I|1|DA|G|214
4W2I|1|DA|G|215
4W2I|1|DA|A|216
4W2I|1|DA|G|217
4W2I|1|DA|A|218
4W2I|1|DA|G|219
4W2I|1|DA|G|220
4W2I|1|DA|A|221
4W2I|1|DA|A|222
4W2I|1|DA|A|223
4W2I|1|DA|G|224
*
4W2I|1|DA|C|231
4W2I|1|DA|G|232
4W2I|1|DA|A|233
4W2I|1|DA|C|234
4W2I|1|DA|U|235
*
4W2I|1|DA|A|262
4W2I|1|DA|C|263
4W2I|1|DA|C|264
4W2I|1|DA|A|265
4W2I|1|DA|G|266
*
4W2I|1|DA|C|426
4W2I|1|DA|U|427
4W2I|1|DA|A|428
4W2I|1|DA|A|429
4W2I|1|DA|G|430
4W2I|1|DA|U|431
4W2I|1|DA|A|432
4W2I|1|DA|C|433

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34