J6_4W4G_004

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUA*UUUG*CG*CGCC*GCCUAGUGAACC*GAUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4W4G|1|YA|U|2076, 4W4G|1|YA|A|2388, 4W4G|1|YA|U|2390, 4W4G|1|YA|G|2428, 4W4G|1|YA|A|2430, 4W4G|1|YA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W4G|1|YA|U|2074
4W4G|1|YA|U|2075
4W4G|1|YA|U|2076
4W4G|1|YA|A|2077
*
4W4G|1|YA|U|2243
4W4G|1|YA|U|2244
4W4G|1|YA|U|2245
4W4G|1|YA|G|2246
*
4W4G|1|YA|C|2258
4W4G|1|YA|G|2259
*
4W4G|1|YA|C|2281
4W4G|1|YA|G|2282
4W4G|1|YA|C|2283
4W4G|1|YA|C|2284
*
4W4G|1|YA|G|2384
4W4G|1|YA|C|2385
4W4G|1|YA|C|2386
4W4G|1|YA|U|2387
4W4G|1|YA|A|2388
4W4G|1|YA|G|2389
4W4G|1|YA|U|2390
4W4G|1|YA|G|2391
4W4G|1|YA|A|2392
4W4G|1|YA|A|2393
4W4G|1|YA|C|2394
4W4G|1|YA|C|2395
*
4W4G|1|YA|G|2421
4W4G|1|YA|A|2422
4W4G|1|YA|U|2423
4W4G|1|YA|C|2424
4W4G|1|YA|A|2425
4W4G|1|YA|A|2426
4W4G|1|YA|C|2427
4W4G|1|YA|G|2428
4W4G|1|YA|G|2429
4W4G|1|YA|A|2430
4W4G|1|YA|U|2431
4W4G|1|YA|A|2432
4W4G|1|YA|A|2433
4W4G|1|YA|A|2434
4W4G|1|YA|A|2435

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XW

Transfer RNA; tRNA

Chain Y0

50S ribosomal protein L27

Chain Y1

50S ribosomal protein L28

Chain Y6

50S ribosomal protein L33

Chain Y8

50S ribosomal protein L35

Chain YD

50S ribosomal protein L2

Chain YP

50S ribosomal protein L15