J6_4WF1_005

3D structure

PDB id

4WF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to negamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.09 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

4WF1|1|DA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WF1|1|DA|G|45
4WF1|1|DA|G|46
*
4WF1|1|DA|C|179
4WF1|1|DA|G|180
4WF1|1|DA|A|181
4WF1|1|DA|A|182
4WF1|1|DA|C|183
4WF1|1|DA|C|184
*
4WF1|1|DA|G|212
4WF1|1|DA|A|213
4WF1|1|DA|G|214
4WF1|1|DA|G|215
4WF1|1|DA|A|216
4WF1|1|DA|A|217
4WF1|1|DA|A|218
4WF1|1|DA|A|219
4WF1|1|DA|G|220
4WF1|1|DA|A|221
4WF1|1|DA|A|222
4WF1|1|DA|A|223
4WF1|1|DA|U|224
*
4WF1|1|DA|A|231
4WF1|1|DA|G|232
4WF1|1|DA|A|233
4WF1|1|DA|U|234
4WF1|1|DA|U|235
*
4WF1|1|DA|A|262
4WF1|1|DA|G|263
4WF1|1|DA|C|264
4WF1|1|DA|A|265
4WF1|1|DA|G|266
*
4WF1|1|DA|C|426
4WF1|1|DA|U|427
4WF1|1|DA|A|428
4WF1|1|DA|A|429
4WF1|1|DA|A|430
4WF1|1|DA|U|431
4WF1|1|DA|A|432
4WF1|1|DA|C|433

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34