J6_4WF9_001

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAG*CGAUU*AAGAG*CUAAAUAC

Length

37 nucleotides

Bulged bases

4WF9|1|X|C|184, 4WF9|1|X|A|226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J6_45299.4

Basepair signature

cWW-cSS-cWW-cSS-tWW-F-tWW-F-F-cWW-tSS-tHW-cWW-cWW-cSS-F-F-tHS-F-cWW-cSS-cSS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4WF9|1|X|G|45
4WF9|1|X|C|46
*
4WF9|1|X|G|181
4WF9|1|X|C|182
4WF9|1|X|A|183
4WF9|1|X|C|184
4WF9|1|X|A|185
4WF9|1|X|C|186
*
4WF9|1|X|G|217
4WF9|1|X|G|218
4WF9|1|X|A|219
4WF9|1|X|A|220
4WF9|1|X|G|221
4WF9|1|X|A|222
4WF9|1|X|G|223
4WF9|1|X|A|224
4WF9|1|X|A|225
4WF9|1|X|A|226
4WF9|1|X|G|227
*
4WF9|1|X|C|234
4WF9|1|X|G|235
4WF9|1|X|A|236
4WF9|1|X|U|237
4WF9|1|X|U|238
*
4WF9|1|X|A|265
4WF9|1|X|A|266
4WF9|1|X|G|267
4WF9|1|X|A|268
4WF9|1|X|G|269
*
4WF9|1|X|C|472
4WF9|1|X|U|473
4WF9|1|X|A|474
4WF9|1|X|A|475
4WF9|1|X|A|476
4WF9|1|X|U|477
4WF9|1|X|A|478
4WF9|1|X|C|479

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34