Loop J6_4WF9

3D structure

PDB id: 4WF9 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin
Experimental method: X-RAY DIFFRACTION
Resolution: 3.43 Å

Loop

Sequence: UUUA*UUUG*CG*CGCUC*GACUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 43 nucleotides
Bulged bases: 4WF9|1|X|U|2103, 4WF9|1|X|A|2415, 4WF9|1|X|U|2417, 4WF9|1|X|G|2455, 4WF9|1|X|A|2457, 4WF9|1|X|U|2458
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: J6_93066.1
Basepair signature: cWW-F-F-F-F-F-F-F-tSS-F-F-cWW-F-F-F-F-F-F-F-cWW-cWW-cHW-F-cWH-F-cWW-cWW-F-cWW
Number of instances in this motif group: 1

Unit IDs

4WF9|1|X|U|2101
4WF9|1|X|U|2102
4WF9|1|X|U|2103
4WF9|1|X|A|2104
*
4WF9|1|X|U|2270
4WF9|1|X|U|2271
4WF9|1|X|U|2272
4WF9|1|X|G|2273
*
4WF9|1|X|C|2285
4WF9|1|X|G|2286
*
4WF9|1|X|C|2308
4WF9|1|X|G|2309
4WF9|1|X|C|2310
4WF9|1|X|U|2311
4WF9|1|X|C|2312
*
4WF9|1|X|G|2410
4WF9|1|X|A|2411
4WF9|1|X|C|2412
4WF9|1|X|U|2413
4WF9|1|X|U|2414
4WF9|1|X|A|2415
4WF9|1|X|G|2416
4WF9|1|X|U|2417
4WF9|1|X|G|2418
4WF9|1|X|A|2419
4WF9|1|X|U|2420
4WF9|1|X|C|2421
4WF9|1|X|C|2422
*
4WF9|1|X|G|2448
4WF9|1|X|C|2449
4WF9|1|X|U|2450
4WF9|1|X|C|2451
4WF9|1|X|A|2452
4WF9|1|X|A|2453
4WF9|1|X|C|2454
4WF9|1|X|G|2455
4WF9|1|X|G|2456
4WF9|1|X|A|2457
4WF9|1|X|U|2458
4WF9|1|X|A|2459
4WF9|1|X|A|2460
4WF9|1|X|A|2461
4WF9|1|X|A|2462

Current chains

Chain X: 23S ribosomal RNA

Nearby chains

Chain 3: 50S ribosomal protein L35
Chain A: 50S ribosomal protein L2
Chain I: 50S ribosomal protein L15
Chain T: 50S ribosomal protein L27

J6_4WF9_002