Loop J6_4WFA

3D structure

PDB id: 4WFA (explore in PDB, NAKB, or RNA 3D Hub)
Description: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid
Experimental method: X-RAY DIFFRACTION
Resolution: 3.39 Å

Loop

Sequence: UUUA*UUUG*CG*CGCU*ACUUAGUGAUCC*GCUCAACGGAUAAAA
Length: 41 nucleotides
Bulged bases: 4WFA|1|X|U|2103, 4WFA|1|X|U|2417, 4WFA|1|X|G|2455, 4WFA|1|X|A|2457, 4WFA|1|X|U|2458
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4WFA|1|X|U|2101
4WFA|1|X|U|2102
4WFA|1|X|U|2103
4WFA|1|X|A|2104
*
4WFA|1|X|U|2270
4WFA|1|X|U|2271
4WFA|1|X|U|2272
4WFA|1|X|G|2273
*
4WFA|1|X|C|2285
4WFA|1|X|G|2286
*
4WFA|1|X|C|2308
4WFA|1|X|G|2309
4WFA|1|X|C|2310
4WFA|1|X|U|2311
*
4WFA|1|X|A|2411
4WFA|1|X|C|2412
4WFA|1|X|U|2413
4WFA|1|X|U|2414
4WFA|1|X|A|2415
4WFA|1|X|G|2416
4WFA|1|X|U|2417
4WFA|1|X|G|2418
4WFA|1|X|A|2419
4WFA|1|X|U|2420
4WFA|1|X|C|2421
4WFA|1|X|C|2422
*
4WFA|1|X|G|2448
4WFA|1|X|C|2449
4WFA|1|X|U|2450
4WFA|1|X|C|2451
4WFA|1|X|A|2452
4WFA|1|X|A|2453
4WFA|1|X|C|2454
4WFA|1|X|G|2455
4WFA|1|X|G|2456
4WFA|1|X|A|2457
4WFA|1|X|U|2458
4WFA|1|X|A|2459
4WFA|1|X|A|2460
4WFA|1|X|A|2461
4WFA|1|X|A|2462

Current chains

Chain X: 23S rRNA

Nearby chains

Chain 3: 50S ribosomal protein L35
Chain A: 50S ribosomal protein L2
Chain I: 50S ribosomal protein L15
Chain T: 50S ribosomal protein L27
Chain U: 50S ribosomal protein L28

J6_4WFA_002