J6_4WOI_003

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

4WOI|1|CA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WOI|1|CA|G|45
4WOI|1|CA|G|46
*
4WOI|1|CA|C|179
4WOI|1|CA|G|180
4WOI|1|CA|A|181
4WOI|1|CA|A|182
4WOI|1|CA|C|183
*
4WOI|1|CA|G|214
4WOI|1|CA|G|215
4WOI|1|CA|A|216
4WOI|1|CA|A|217
4WOI|1|CA|A|218
4WOI|1|CA|A|219
4WOI|1|CA|G|220
4WOI|1|CA|A|221
4WOI|1|CA|A|222
4WOI|1|CA|A|223
4WOI|1|CA|U|224
*
4WOI|1|CA|A|231
4WOI|1|CA|G|232
4WOI|1|CA|A|233
4WOI|1|CA|U|234
4WOI|1|CA|U|235
*
4WOI|1|CA|A|262
4WOI|1|CA|G|263
4WOI|1|CA|C|264
4WOI|1|CA|A|265
4WOI|1|CA|G|266
*
4WOI|1|CA|C|426
4WOI|1|CA|U|427
4WOI|1|CA|A|428
4WOI|1|CA|A|429
4WOI|1|CA|A|430
4WOI|1|CA|U|431
4WOI|1|CA|A|432
4WOI|1|CA|C|433

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L34