J6_4WSD_003

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4WSD|1|1H|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WSD|1|1H|G|45
4WSD|1|1H|C|46
*
4WSD|1|1H|G|179
4WSD|1|1H|G|180
4WSD|1|1H|A|181
4WSD|1|1H|A|182
4WSD|1|1H|C|183
*
4WSD|1|1H|G|214
4WSD|1|1H|G|215
4WSD|1|1H|A|216
4WSD|1|1H|G|217
4WSD|1|1H|A|218
4WSD|1|1H|G|219
4WSD|1|1H|G|220
4WSD|1|1H|A|221
4WSD|1|1H|A|222
4WSD|1|1H|A|223
4WSD|1|1H|G|224
*
4WSD|1|1H|C|231
4WSD|1|1H|G|232
4WSD|1|1H|A|233
4WSD|1|1H|C|234
4WSD|1|1H|U|235
*
4WSD|1|1H|A|262
4WSD|1|1H|C|263
4WSD|1|1H|C|264
4WSD|1|1H|A|265
4WSD|1|1H|G|266
*
4WSD|1|1H|C|426
4WSD|1|1H|U|427
4WSD|1|1H|A|428
4WSD|1|1H|A|429
4WSD|1|1H|G|430
4WSD|1|1H|U|431
4WSD|1|1H|A|432
4WSD|1|1H|C|433

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain P8

50S ribosomal protein L34