J6_4Y4P_003

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GGAAC*GGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

36 nucleotides

Bulged bases

4Y4P|1|2A|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4P|1|2A|G|44
4Y4P|1|2A|C|45
*
4Y4P|1|2A|G|179
4Y4P|1|2A|G|180
4Y4P|1|2A|A|181
4Y4P|1|2A|A|182
4Y4P|1|2A|C|183
*
4Y4P|1|2A|G|214
4Y4P|1|2A|G|215
4Y4P|1|2A|A|216
4Y4P|1|2A|G|217
4Y4P|1|2A|A|218
4Y4P|1|2A|G|219
4Y4P|1|2A|G|220
4Y4P|1|2A|A|221
4Y4P|1|2A|A|222
4Y4P|1|2A|A|223
4Y4P|1|2A|G|224
*
4Y4P|1|2A|C|231
4Y4P|1|2A|G|232
4Y4P|1|2A|A|233
4Y4P|1|2A|C|234
4Y4P|1|2A|U|235
*
4Y4P|1|2A|A|262
4Y4P|1|2A|C|263
4Y4P|1|2A|C|264
4Y4P|1|2A|A|265
4Y4P|1|2A|G|266
*
4Y4P|1|2A|C|426
4Y4P|1|2A|U|427
4Y4P|1|2A|A|428
4Y4P|1|2A|A|429
4Y4P|1|2A|G|430
4Y4P|1|2A|U|431
4Y4P|1|2A|A|432
4Y4P|1|2A|C|433

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34