J6_4YBB_001

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

39 nucleotides

Bulged bases

4YBB|1|CA|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YBB|1|CA|G|45
4YBB|1|CA|G|46
*
4YBB|1|CA|C|179
4YBB|1|CA|G|180
4YBB|1|CA|A|181
4YBB|1|CA|A|182
4YBB|1|CA|C|183
4YBB|1|CA|C|184
*
4YBB|1|CA|G|212
4YBB|1|CA|A|213
4YBB|1|CA|G|214
4YBB|1|CA|G|215
4YBB|1|CA|A|216
4YBB|1|CA|A|217
4YBB|1|CA|A|218
4YBB|1|CA|A|219
4YBB|1|CA|G|220
4YBB|1|CA|A|221
4YBB|1|CA|A|222
4YBB|1|CA|A|223
4YBB|1|CA|U|224
*
4YBB|1|CA|A|231
4YBB|1|CA|G|232
4YBB|1|CA|A|233
4YBB|1|CA|U|234
4YBB|1|CA|U|235
*
4YBB|1|CA|A|262
4YBB|1|CA|G|263
4YBB|1|CA|C|264
4YBB|1|CA|A|265
4YBB|1|CA|G|266
*
4YBB|1|CA|C|426
4YBB|1|CA|U|427
4YBB|1|CA|A|428
4YBB|1|CA|A|429
4YBB|1|CA|A|430
4YBB|1|CA|U|431
4YBB|1|CA|A|432
4YBB|1|CA|C|433

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34