J6_4YBB_002

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA

Length

41 nucleotides

Bulged bases

4YBB|1|CA|U|2076, 4YBB|1|CA|A|2388, 4YBB|1|CA|U|2390, 4YBB|1|CA|G|2428, 4YBB|1|CA|A|2430, 4YBB|1|CA|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4YBB|1|CA|U|2074
4YBB|1|CA|U|2075
4YBB|1|CA|U|2076
4YBB|1|CA|A|2077
*
4YBB|1|CA|U|2243
4YBB|1|CA|U|2244
4YBB|1|CA|U|2245
4YBB|1|CA|G|2246
*
4YBB|1|CA|C|2258
4YBB|1|CA|U|2259
*
4YBB|1|CA|A|2281
4YBB|1|CA|G|2282
4YBB|1|CA|C|2283
4YBB|1|CA|A|2284
*
4YBB|1|CA|U|2384
4YBB|1|CA|C|2385
4YBB|1|CA|A|2386
4YBB|1|CA|U|2387
4YBB|1|CA|A|2388
4YBB|1|CA|G|2389
4YBB|1|CA|U|2390
4YBB|1|CA|G|2391
4YBB|1|CA|A|2392
4YBB|1|CA|U|2393
4YBB|1|CA|C|2394
4YBB|1|CA|C|2395
*
4YBB|1|CA|G|2421
4YBB|1|CA|C|2422
4YBB|1|CA|U|2423
4YBB|1|CA|C|2424
4YBB|1|CA|A|2425
4YBB|1|CA|A|2426
4YBB|1|CA|C|2427
4YBB|1|CA|G|2428
4YBB|1|CA|G|2429
4YBB|1|CA|A|2430
4YBB|1|CA|U|2431
4YBB|1|CA|A|2432
4YBB|1|CA|A|2433
4YBB|1|CA|A|2434
4YBB|1|CA|A|2435

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L33

Chain C4

50S ribosomal protein L35

Chain CC

50S ribosomal protein L2

Chain CM

50S ribosomal protein L15

Chain CX

50S ribosomal protein L27

Chain CY

50S ribosomal protein L28